SNP Profiles matching CRU 12

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC
1._MOQ_4_/25	_	_	AC	GG	CT	_	AC	CC	AG	CC	_	_	AT	_
2._MOQ_4_/25	_	_	AC	GG	CT	_	AC	CC	AG	CC	_	_	AT	_
3._MOQ_4_/25	_	_	AC	GG	CT	_	AC	CC	AG	CC	_	_	AT	_
4._MOQ_4_/25	_	_	AC	GG	CT	_	AC	CC	AG	CC	_	_	AT	_
5._MOQ_4_/25	_	_	AC	GG	CT	_	AC	CC	AG	CC	_	_	AT	_
6._GC-05-24-1-24	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC
7._GC-05-24-1-24	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC
8._GC-05-24-1-24	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC
9._GC-05-024-1-24	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC
10._GC-05-24-1-24	CT	AC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CT	GG	GG	AC	CT	CT	CC	GG	AG	TT	AC	GG
1._MOQ_4_/25	AG	AA	CT	GG	GG	AC	_	CT	_	GG	_	_	_	GG
2._MOQ_4_/25	AG	AA	CT	GG	GG	AC	_	CT	_	GG	_	_	_	GG
3._MOQ_4_/25	AG	AA	CT	GG	GG	AC	_	CT	_	GG	_	_	_	GG
4._MOQ_4_/25	AG	AA	CT	GG	GG	AC	_	CT	_	GG	_	_	_	GG
5._MOQ_4_/25	AG	AA	CT	GG	GG	AC	_	CT	_	GG	_	_	_	GG
6._GC-05-24-1-24	AG	AA	CT	GG	GG	AC	CT	CT	CT	GG	AG	TT	AC	GG
7._GC-05-24-1-24	AG	AA	CT	GG	GG	AC	CT	CT	CT	GG	AG	TT	AC	GG
8._GC-05-24-1-24	AG	AA	CT	GG	GG	AC	CT	CT	CT	GG	AG	TT	AC	GG
9._GC-05-024-1-24	AG	AA	CT	GG	GG	AC	CT	CT	CT	GG	AG	TT	AC	GG
10._GC-05-24-1-24	AG	AA	CT	GG	GG	AC	_	CT	CT	GG	AG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	CC	CC	GT	GG	AT	GT	CT	CC	TT	CG	AA
1._MOQ_4_/25	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
2._MOQ_4_/25	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
3._MOQ_4_/25	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
4._MOQ_4_/25	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
5._MOQ_4_/25	_	CC	AG	_	CC	_	_	_	GT	_	_	TT	CG	AA
6._GC-05-24-1-24	CG	CC	AG	CC	CC	GT	GG	AT	GT	TT	CC	TT	CG	AA
7._GC-05-24-1-24	CG	CC	AG	CC	CC	GT	GG	AT	GT	TT	CC	TT	CG	AA
8._GC-05-24-1-24	CG	CC	AG	CC	CC	GT	GG	AT	GT	TT	CC	TT	CG	AA
9._GC-05-024-1-24	CG	CC	AG	CC	CC	GT	GG	AT	GT	TT	CC	TT	CG	AA
10._GC-05-24-1-24	CG	CC	AG	CC	CC	GT	GG	AT	GT	TT	CC	TT	CG	AA

Input profile: CRU_12 RUQ_1528

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._MOQ_4_/25

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5124 5 > FP

Dapeng Zhang, 2016

2._MOQ_4_/25

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5124 4 > FP

Dapeng Zhang, 2016

3._MOQ_4_/25

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5124 3 > FP

Dapeng Zhang, 2016

4._MOQ_4_/25

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5124 1 > FP

Dapeng Zhang, 2016

5._MOQ_4_/25

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5124 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._MOQ_4_/25 GC-05-24-1-24

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 1, Rep: 24, Tree: PL1

Notes: PL1 FP1

7._MOQ_4_/25 GC-05-24-1-24

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 1, Rep: 24, Tree: PL4

Notes: PL4 FP3

8._MOQ_4_/25 GC-05-24-1-24

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 1, Rep: 24, Tree: PL5

Notes: PL5 FP4

9._MOQ_4_/25 GC-05-024-1-24

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._MOQ_4_/25 GC-05-24-1-24

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 1, Rep: 24, Tree: PL3

Notes: PL3 FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484